STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10437.1KEGG: syc:syc1743_c 2.6e-21 amiA; N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase. (189 aa)    
Predicted Functional Partners:
EDP12181.1
KEGG: spd:SPD_1920 9.1e-12 peptidase, S54 (rhomboid) family protein; COG: COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); Psort location: CytoplasmicMembrane, score:9.99.
  
   0.847
EDP11921.1
COG: COG2834 Outer membrane lipoprotein-sorting protein; Psort location: Cytoplasmic, score:8.87.
    
   0.810
EDP10803.1
Putative peptidoglycan binding domain protein; KEGG: fal:FRAAL2794 6.8e-07 putative N-acetylmuramoyl-L-alanine amidase precursor (cell wall hydrolase) (autolysin) K01446; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
 
 
 0.701
EDP10708.1
Putative peptidoglycan binding domain protein; KEGG: fal:FRAAL2794 5.5e-11 putative N-acetylmuramoyl-L-alanine amidase precursor (cell wall hydrolase) (autolysin) K01446; COG: NOG36567 non supervised orthologous group.
 
  
 0.653
EDP10315.1
N-acetylmuramoyl-L-alanine amidase; KEGG: gka:GK0142 4.0e-41 germination-specific N-acetylmuramoyl-L-alanine amidase (cell wall hydrolase) (autolysin) K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score:8.87.
  
  
 
0.620
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
     
 0.579
spoIID
COG: COG2385 Sporulation protein and related proteins.
 
 
 0.574
EDP12293.1
Bacterial group 3 Ig-like protein; KEGG: bce:BC0896 3.0e-34 S-layer protein / peptidoglycan endo-beta-N-acetylglucosaminidase K01238; COG: COG4193 Beta- N-acetylglucosaminidase.
  
 
 0.532
EDP10689.1
KEGG: bce:BC0896 4.6e-34 S-layer protein / peptidoglycan endo-beta-N-acetylglucosaminidase K01238; COG: COG4193 Beta- N-acetylglucosaminidase.
  
 
 0.532
EDP11584.1
RDD family protein; COG: COG4767 Glycopeptide antibiotics resistance protein; Psort location: CytoplasmicMembrane, score:9.99.
   
 
 0.531
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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