STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10479.1Capsular exopolysaccharide family; KEGG: bsu:BG12508 1.7e-33 ywqD; similar to capsular polysaccharide biosynthesis protein K00903; COG: COG0489 ATPases involved in chromosome partitioning; Psort location: CytoplasmicMembrane, score:9.82. (242 aa)    
Predicted Functional Partners:
EDP10477.1
Chain length determinant protein; KEGG: rxy:Rxyl_0560 2.6e-14 protein-tyrosine kinase K08252; COG: COG3944 Capsular polysaccharide biosynthesis protein.
 
 0.998
EDP10475.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: noc:Noc_1508 1.6e-46 undecaprenyl-phosphate galactosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score:9.49.
 
 
 0.996
EDP10478.1
PHP domain protein; KEGG: spd:SPD_0316 1.3e-33 cps2B; tyrosine-protein phosphatase CpsB K01104; COG: COG4464 Capsular polysaccharide biosynthesis protein; Psort location: Cytoplasmic, score:8.87.
 
  
 0.976
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87.
  
 
 0.937
EDP10403.1
Hypothetical protein; KEGG: pca:Pcar_1519 6.9e-37 undecaprenyl-phosphate glucosephosphotransferase K00996; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score:9.49.
 
 
 0.904
EDP10487.1
Hypothetical protein; KEGG: ecj:JW3597 0.00010 rfaL; O-antigen ligase K02847; COG: COG0475 Kef-type K+ transport systems, membrane components; Psort location: CytoplasmicMembrane, score:9.99.
  
 
 0.895
EDP10484.1
Glycosyltransferase, group 1 family protein; KEGG: mma:MM1142 1.2e-23 glycosyltransferase K00754; COG: COG0438 Glycosyltransferase; Psort location: Cytoplasmic, score:8.87.
 
  
 0.825
EDP10485.1
Hypothetical protein; KEGG: efa:EF2489 8.6e-22 MurB family protein K00075; COG: NOG19084 non supervised orthologous group.
 
  
 0.812
EDP10483.1
Hypothetical protein; KEGG: mma:MM0768 2.2e-40 glycosyltransferase K00754; COG: NOG08640 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
 
     0.809
EDP10486.1
4Fe-4S binding domain protein; KEGG: afu:AF1833 1.7e-08 F420H2:quinone oxidoreductase, 39 kDa subunit, putative K00344; COG: COG1035 Coenzyme F420-reducing hydrogenase, beta subunit; Psort location: Cytoplasmic, score:8.87.
 
     0.803
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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