STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifJKEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score:8.87. (1168 aa)    
Predicted Functional Partners:
EDP12248.1
Hypothetical protein; KEGG: bce:BC0399 4.5e-81 oxidoreductase; COG: COG0723 Rieske Fe-S protein.
  
 
 0.999
EDP11022.1
Rubredoxin; KEGG: fnu:FN1424 2.4e-265 acyl-CoA dehydrogenase, short-chain specific K00248; COG: COG2025 Electron transfer flavoprotein, alpha subunit; Psort location: Cytoplasmic, score:9.98.
  
 0.999
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.999
rnfC
Electron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
   
 0.999
pyk
Pyruvate kinase; KEGG: bce:BC4599 1.3e-131 pyruvate kinase K00873; COG: COG0469 Pyruvate kinase; Psort location: Cytoplasmic, score:8.87.
  
 0.998
EDP11353.1
4Fe-4S binding domain protein; KEGG: mmp:MMP0824 5.8e-09 vhcB; coenzyme F420-non-reducing hydrogenase subunit beta; COG: COG1145 Ferredoxin; Psort location: Cytoplasmic, score:8.87.
  
 0.998
EDP10746.1
acyl-CoA dehydrogenase, C-terminal domain protein; KEGG: cpe:CPE2300 1.6e-140 bcd; butyryl-CoA dehydrogenase, putative K00248; COG: COG1960 Acyl-CoA dehydrogenases; Psort location: Cytoplasmic, score:8.87.
  
 0.996
EDP11456.1
Alcohol dehydrogenase, iron-dependent; KEGG: aae:aq_1145 3.5e-49 dhaT; 1,3 propanediol dehydrogenase K00086; COG: COG1454 Alcohol dehydrogenase, class IV; Psort location: Cytoplasmic, score:9.98.
  
 
 0.995
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 
 0.995
ppdK
KEGG: cpr:CPR_1983 0. ppdK; pyruvate,phosphate dikinase K01006; COG: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Psort location: Cytoplasmic, score:9.98; Belongs to the PEP-utilizing enzyme family.
    
 0.995
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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