STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10523.1Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.99. (132 aa)    
Predicted Functional Partners:
EDP10522.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.35.
  
    0.794
EDP10524.1
HAD hydrolase, family IA, variant 3; KEGG: ret:RHE_CH00996 7.6e-15 probable hydrolase protein K01560; COG: COG1011 Predicted hydrolase (HAD superfamily); Psort location: Cytoplasmic, score:8.87.
       0.773
rumA-3
23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: bcl:ABC1101 9.5e-88 S-adenosylmethionine (SAM)-dependent methyltransferase K00599; COG: COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Psort location: Cytoplasmic, score:8.87; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.773
htpG
Hsp90 protein; Molecular chaperone. Has ATPase activity.
       0.504
EDP10526.1
Hypothetical protein; KEGG: cal:orf19.6294 0.0040 MYO1; class II myosin heavy chain K01553; COG: NOG07592 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
       0.440
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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