STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10539.1Transcriptional regulator, PadR family; COG: COG1695 Predicted transcriptional regulators. (111 aa)    
Predicted Functional Partners:
EDP10541.1
KEGG: afu:AF1021 2.6e-30 ABC transporter, ATP-binding protein K02017; COG: COG1131 ABC-type multidrug transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.49.
  
    0.792
EDP10540.1
Hypothetical protein; COG: NOG21910 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.99.
       0.785
EDP10542.1
Hypothetical protein; KEGG: pfo:Pfl_3615 0.0032 proton-translocating NADH-quinone oxidoreductase, chain N K00343; Psort location: CytoplasmicMembrane, score:9.99.
       0.757
EDP10543.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.99.
       0.492
EDP10538.1
Acetyltransferase, GNAT family; KEGG: bcl:ABC3830 6.8e-23 aminoglycoside N6'-acetyltransferase K00663; COG: COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; Psort location: Cytoplasmic, score:8.87.
       0.459
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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