STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10582.1Hypothetical protein; KEGG: mta:Moth_1016 1.2e-62 catalase K00429; COG: COG3546 Mn-containing catalase; Psort location: Cytoplasmic, score:8.87. (239 aa)    
Predicted Functional Partners:
EDP11387.1
COG: COG2323 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:9.99.
 
   
 0.643
EDP10581.1
Putative rRNA methylase; KEGG: spb:M28_Spy0305 1.7e-24 SAM-dependent methyltransferase; COG: COG0500 SAM-dependent methyltransferases; Psort location: Cytoplasmic, score:8.87.
       0.613
spoIVA
Stage IV sporulation protein A; COG: NOG05962 non supervised orthologous group; Psort location: Cytoplasmic, score:8.87.
  
  
 0.488
EDP12248.1
Hypothetical protein; KEGG: bce:BC0399 4.5e-81 oxidoreductase; COG: COG0723 Rieske Fe-S protein.
 
     0.461
EDP10580.1
tRNA nucleotidyltransferase/poly(A) polymerase family protein; KEGG: ctc:CTC01205 1.0e-81 tRNA nucleotidyltransferase (CCA-adding enzyme) K00974; COG: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Psort location: Cytoplasmic, score:8.87.
       0.454
EDP10583.1
KEGG: cpr:CPR_1416 3.7e-237 clpB; ClpB protein K03695; COG: COG0542 ATPases with chaperone activity, ATP-binding subunit; Psort location: Cytoplasmic, score:9.98; Belongs to the ClpA/ClpB family.
     
 0.446
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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