STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10683.1COG: COG4903 Genetic competence transcription factor; Psort location: Cytoplasmic, score:9.98. (139 aa)    
Predicted Functional Partners:
EDP11405.1
Putative DNA internalization competence protein ComEC/Rec2-like protein; COG: COG0658 Predicted membrane metal-binding protein; Psort location: CytoplasmicMembrane, score:9.97.
  
  
 0.667
EDP11173.1
Prepilin-type cleavage/methylation N-terminal domain protein; COG: COG4537 Competence protein ComGC.
  
  
 0.632
EDP10684.1
RmuC domain protein; COG: COG1322 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.87.
       0.623
EDP11882.1
COG: COG4851 Protein involved in sex pheromone biosynthesis.
  
   
 0.622
EDP10583.1
KEGG: cpr:CPR_1416 3.7e-237 clpB; ClpB protein K03695; COG: COG0542 ATPases with chaperone activity, ATP-binding subunit; Psort location: Cytoplasmic, score:9.98; Belongs to the ClpA/ClpB family.
    
 
 0.619
EDP10120.1
ATPase, AAA family; KEGG: mbo:Mb3627c 4.3e-77 clpC; probable ATP-dependent Clp protease ATP-binding subunit ClpC K03696; COG: COG0542 ATPases with chaperone activity, ATP-binding subunit; Psort location: Cytoplasmic, score:9.98; Belongs to the ClpA/ClpB family.
    
 
 0.619
recU
Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.
  
     0.597
EDP11654.1
Adenylate cyclase; KEGG: sar:SAR0971 3.6e-17 glutathione S-transferase K00799; COG: COG4116 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.87.
  
   
 0.596
rnhC
Ribonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
     0.593
ezrA
Septation ring formation regulator EzrA; KEGG: fnu:FN0522 4.5e-09 exonuclease SBCC K03546; COG: COG4477 Negative regulator of septation ring formation; Psort location: Cytoplasmic, score:8.87.
  
     0.592
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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