STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10270.1DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 4.0e-05 dam; adenine-specific DNA methyltransferase K06223; COG: COG1476 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.87. (72 aa)    
Predicted Functional Partners:
EDP11664.1
Hypothetical protein; Psort location: Cytoplasmic, score:8.87.
   
 
 0.821
EDP10454.1
Hypothetical protein.
   
 
 0.821
EDP10271.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:7.63.
       0.782
EDP10272.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score:9.99.
       0.773
clpP
Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.533
EDP10274.1
Hypothetical protein.
       0.533
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.