STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDP10368.1Hypothetical protein; COG: COG1956 GAF domain-containing protein; Psort location: Cytoplasmic, score:8.87. (150 aa)    
Predicted Functional Partners:
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
  0.908
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
    
 0.897
EDP11539.1
Aminotransferase, class I/II; KEGG: sde:Sde_1232 1.6e-16 aspartate transaminase K00811; COG: COG1448 Aspartate/tyrosine/aromatic aminotransferase; Psort location: Cytoplasmic, score:9.98.
    
  0.746
EDP10533.1
Bacterial transferase hexapeptide repeat protein; KEGG: azo:azo2138 3.6e-40 conserved hypothetical protein K00680; COG: COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; Psort location: Cytoplasmic, score:8.87.
      0.733
EDP10369.1
Coat F domain protein; COG: NOG14308 non supervised orthologous group.
       0.515
EDP10370.1
Hypothetical protein.
       0.513
EDP11456.1
Alcohol dehydrogenase, iron-dependent; KEGG: aae:aq_1145 3.5e-49 dhaT; 1,3 propanediol dehydrogenase K00086; COG: COG1454 Alcohol dehydrogenase, class IV; Psort location: Cytoplasmic, score:9.98.
    
  0.480
EDP10972.1
FHA domain protein; KEGG: syn:slr1991 2.0e-06 cya1; adenylate cyclase K01768; COG: COG1716 FOG: FHA domain; Psort location: Cytoplasmic, score:8.87.
    
  0.480
EDP12378.1
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
  0.475
EDP10314.1
HD domain protein; KEGG: sat:SYN_03611 1.3e-33 GTP pyrophosphokinase / guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K00951:K01139; COG: COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; Psort location: Cytoplasmic, score:8.87.
    
  0.475
Your Current Organism:
Absiella dolichum
NCBI taxonomy Id: 428127
Other names: A. dolichum DSM 3991, Absiella dolichum ATCC 29143, Absiella dolichum DSM 3991, Eubacterium dolichum ATCC 29143, Eubacterium dolichum DSM 3991, Eubacterium dolichum strain DSM 3991
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