STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS62436.1PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc1208 hypothetical protein. (287 aa)    
Predicted Functional Partners:
ACS64684.1
PFAM: Patatin; KEGG: rso:RSc0013 hypothetical protein.
 
     0.621
rlmD
RNA methyltransferase, TrmA family; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
     
 0.615
ACS65355.1
PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: rso:RS04799 hypothetical protein.
  
  
 0.609
ACS65245.1
KEGG: rso:RS02986 hypothetical protein.
  
     0.591
ACS64874.1
KEGG: rso:RS00391 hypothetical protein.
  
     0.570
ACS63645.1
PFAM: HipA domain protein; KEGG: rso:RSc2508 hypothetical protein.
  
     0.542
ACS65364.1
PFAM: type IV pilus assembly PilZ; KEGG: reh:H16_A1321 hypothetical protein.
  
    0.527
ACS62104.1
KEGG: rso:RSc0787 hypothetical protein.
  
     0.501
ACS65147.1
KEGG: bch:Bcen2424_4033 hypothetical protein.
  
     0.484
ACS65341.1
KEGG: pau:PA14_46540 hypothetical protein.
 
    0.484
Your Current Organism:
Ralstonia pickettii 12D
NCBI taxonomy Id: 428406
Other names: R. pickettii 12D, Ralstonia pickettii str. 12D, Ralstonia pickettii strain 12D
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.