STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS63883.1TIGRFAM: TonB family protein; KEGG: rso:RSc2778 hypothetical protein. (304 aa)    
Predicted Functional Partners:
ACS63671.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rso:RSc2528 biopolymer transport ExbB-like transmembrane protein.
 
 
 0.907
ACS63672.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc2529 biopolymer transport ExbD-like transmembrane protein.
 
 
 0.899
ACS63380.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bvi:Bcep1808_6560 TonB-dependent receptor.
  
 
 0.840
ACS65493.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RS05316 putative ferrisiderophore receptor protein.
  
 
 0.840
ACS62027.1
TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc0733 putative TolR-related transport transmembrane protein.
  
 
 0.821
ACS63076.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc1965 biopolymer transport transmembrane protein.
  
 
 0.821
ACS61815.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc0595 putative outer membrane receptor signal peptide protein.
 
 
 0.788
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.786
ACS63098.1
KEGG: rso:RSc1986 hypothetical protein.
  
     0.756
ACS63483.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rso:RSc2400 outer membrane receptor protein.
 
 
 
 0.744
Your Current Organism:
Ralstonia pickettii 12D
NCBI taxonomy Id: 428406
Other names: R. pickettii 12D, Ralstonia pickettii str. 12D, Ralstonia pickettii strain 12D
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