Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCU45415.1Uncharacterised protein. (241 aa)    
Predicted Functional Partners:
cccA_1
Cytochrome c551.
 
     0.801
petC
Cytochrome b6-f complex iron-sulfur subunit.
 
     0.798
SCU16098.1
Uncharacterised protein.
  
     0.774
SCU32912.1
Uncharacterised protein.
  
     0.774
SCU44619.1
Protein of uncharacterised function (DUF2626).
  
     0.774
SCU44915.1
Protein of uncharacterised function (DUF2627).
  
     0.774
cccA_2
Cytochrome c A.
  
     0.774
SCU51165.1
YugN-like family.
  
     0.774
ctaG
Cytochrome c oxidase assembly factor CtaG.
  
     0.774
caaD
Cytochrome c oxidase subunit 4B.
  
     0.774
Your Current Organism:
Staphylococcus lentus
NCBI taxonomy Id: 42858
Other names: ATCC 29070, CCUG 15599, CIP 81.63, DSM 20352, NCTC 12102, NRRL B-14758, S. lentus, Staphylococcus sciuri subsp. lentus, strain Roguinsky K21
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