STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCU52133.1Putative DUF2129-containing protein. (88 aa)    
Predicted Functional Partners:
ugpQ_3
Glycerophosphoryl diester phosphodiesterase.
 
     0.820
glnR
Glutamine synthetase repressor.
  
     0.467
SCU37325.1
Sortase.
  
     0.449
SCU38494.1
Esterase.
   
    0.447
rpoE
DNA-directed RNA polymerase delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.409
Your Current Organism:
Staphylococcus lentus
NCBI taxonomy Id: 42858
Other names: ATCC 29070, CCUG 15599, CIP 81.63, DSM 20352, NCTC 12102, NRRL B-14758, S. lentus, Staphylococcus sciuri subsp. lentus, strain Roguinsky K21
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