STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLJ86236.1Zn-dependent amino-or carboxypeptidase, M28 family. (556 aa)    
Predicted Functional Partners:
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.773
SLJ86667.1
TonB-dependent Receptor Plug Domain.
  
     0.740
SLJ91255.1
TonB-dependent Receptor Plug Domain.
  
     0.736
SLK13415.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
 
 0.729
SLJ99050.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
 
 0.728
SLJ89290.1
Peptidase family M28.
  
     0.699
SLJ86665.1
TonB-dependent Receptor Plug Domain.
  
     0.689
SLJ90215.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
    
  0.659
SLK06760.1
Glycyl aminopeptidase. Metallo peptidase. MEROPS family M61.
  
     0.643
SLJ86657.1
Predicted Zn-dependent peptidase.
 
     0.602
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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