STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLJ87711.1NADPH-dependent FMN reductase. (154 aa)    
Predicted Functional Partners:
SLJ93273.1
Hypothetical protein.
   
    0.758
SLK05591.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.728
SLK05381.1
Putative serine protein kinase, PrkA.
   
    0.615
cobT
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
    
  0.613
SLJ89411.1
Nitroreductase.
 
  
 0.606
SLJ87812.1
Catalase.
  
  
 0.549
SLJ87007.1
cob(II)yrinic acid a,c-diamide reductase.
    
 0.547
SLK07124.1
Nitroreductase.
    
 0.547
SLJ87714.1
Hypothetical protein.
       0.539
SLJ87700.1
Exonuclease RecJ.
       0.536
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.