STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLJ88789.1Pilus assembly protein CpaC; Belongs to the bacterial secretin family. (502 aa)    
Predicted Functional Partners:
SLJ88790.1
Pilus assembly protein CpaB.
 
  
 0.981
SLJ88769.1
Pilus assembly protein CpaE.
 
  
 0.942
SLJ88758.1
Tight adherence protein C.
 
  
 0.932
SLJ88761.1
Tight adherence protein B.
 
  
 0.925
SLJ88762.1
Pilus assembly protein CpaF.
  
 0.922
SLJ86688.1
Pilus assembly protein CpaB.
 
  
 0.919
SLJ86674.1
Tight adherence protein C.
 
  
 0.867
SLJ86679.1
Pilus assembly protein CpaE.
 
  
 0.857
SLJ88778.1
Flp pilus assembly protein TadG.
 
     0.831
SLJ86677.1
Tight adherence protein B.
 
  
 0.825
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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