STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLJ93127.1Two component transcriptional regulator, LytTR family. (251 aa)    
Predicted Functional Partners:
SLJ93140.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.984
SLJ93097.1
Sensor histidine kinase YesM.
 
 0.933
SLJ86304.1
PAS domain S-box-containing protein.
 
  
 0.700
SLJ86944.1
Hypothetical protein.
    
 0.693
SLJ91009.1
Multi-sensor hybrid histidine kinase.
    
 0.622
SLJ93142.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.599
SLJ88344.1
PAS domain S-box-containing protein.
    
 0.590
SLK01046.1
Signal transduction histidine kinase.
    
 0.559
SLJ86303.1
Response regulator receiver domain-containing protein.
  
  
  0.542
SLK07385.1
Signal transduction histidine kinase.
 
  
 0.530
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.