Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SLJ87198.1 | SLJ92898.1 | SAMN06295987_101506 | SAMN06295987_10211 | Protein of unknown function. | Hypothetical protein. | 0.504 |
SLJ87198.1 | SLJ93180.1 | SAMN06295987_101506 | SAMN06295987_10276 | Protein of unknown function. | Cell Wall Hydrolase. | 0.506 |
SLJ87198.1 | atpE | SAMN06295987_101506 | SAMN06295987_10828 | Protein of unknown function. | F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.765 |
SLJ92898.1 | SLJ87198.1 | SAMN06295987_10211 | SAMN06295987_101506 | Hypothetical protein. | Protein of unknown function. | 0.504 |
SLJ92898.1 | SLJ93180.1 | SAMN06295987_10211 | SAMN06295987_10276 | Hypothetical protein. | Cell Wall Hydrolase. | 0.437 |
SLJ92898.1 | SLJ93183.1 | SAMN06295987_10211 | SAMN06295987_10277 | Hypothetical protein. | Hypothetical protein. | 0.502 |
SLJ92898.1 | SLJ93186.1 | SAMN06295987_10211 | SAMN06295987_10278 | Hypothetical protein. | Uncharacterized domain 1-containing protein. | 0.532 |
SLJ92898.1 | hpf | SAMN06295987_10211 | SAMN06295987_10280 | Hypothetical protein. | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.572 |
SLJ93180.1 | SLJ87198.1 | SAMN06295987_10276 | SAMN06295987_101506 | Cell Wall Hydrolase. | Protein of unknown function. | 0.506 |
SLJ93180.1 | SLJ92898.1 | SAMN06295987_10276 | SAMN06295987_10211 | Cell Wall Hydrolase. | Hypothetical protein. | 0.437 |
SLJ93180.1 | SLJ93183.1 | SAMN06295987_10276 | SAMN06295987_10277 | Cell Wall Hydrolase. | Hypothetical protein. | 0.626 |
SLJ93180.1 | SLJ93186.1 | SAMN06295987_10276 | SAMN06295987_10278 | Cell Wall Hydrolase. | Uncharacterized domain 1-containing protein. | 0.578 |
SLJ93180.1 | SLJ93189.1 | SAMN06295987_10276 | SAMN06295987_10279 | Cell Wall Hydrolase. | PTS system, nitrogen regulatory IIA component. | 0.490 |
SLJ93180.1 | atpE | SAMN06295987_10276 | SAMN06295987_10828 | Cell Wall Hydrolase. | F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.508 |
SLJ93180.1 | coaE | SAMN06295987_10276 | SAMN06295987_10282 | Cell Wall Hydrolase. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.484 |
SLJ93180.1 | dnaQ | SAMN06295987_10276 | SAMN06295987_10281 | Cell Wall Hydrolase. | DNA polymerase-3 subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.529 |
SLJ93180.1 | hfq | SAMN06295987_10276 | SAMN06295987_101815 | Cell Wall Hydrolase. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.514 |
SLJ93180.1 | hpf | SAMN06295987_10276 | SAMN06295987_10280 | Cell Wall Hydrolase. | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.658 |
SLJ93183.1 | SLJ92898.1 | SAMN06295987_10277 | SAMN06295987_10211 | Hypothetical protein. | Hypothetical protein. | 0.502 |
SLJ93183.1 | SLJ93180.1 | SAMN06295987_10277 | SAMN06295987_10276 | Hypothetical protein. | Cell Wall Hydrolase. | 0.626 |
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