STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLJ99601.1Catechol 2,3-dioxygenase. (194 aa)    
Predicted Functional Partners:
SLJ99597.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.887
SLJ90370.1
methylmalonyl-CoA mutase.
    
 0.707
SLJ99603.1
acyl-CoA dehydrogenase.
  
 
  0.601
SLJ99610.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
  0.559
SLJ99606.1
Acyl dehydratase.
       0.536
SLJ90874.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.523
SLK05013.1
4-hydroxyphenylpyruvate dioxygenase.
 
  
  0.504
SLJ95045.1
Catechol 2,3-dioxygenase.
  
     0.494
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 
  0.488
SLJ86451.1
DNA-binding transcriptional regulator, MarR family.
 
  
  0.481
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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