STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK00431.1Outer membrane receptor proteins, mostly Fe transport. (765 aa)    
Predicted Functional Partners:
SLJ91255.1
TonB-dependent Receptor Plug Domain.
  
 
  0.763
SLK10522.1
Iron complex outermembrane recepter protein.
  
 
  0.743
SLJ86667.1
TonB-dependent Receptor Plug Domain.
  
 
  0.741
SLK00437.1
Hippurate hydrolase.
       0.741
SLK02417.1
Iron complex outermembrane recepter protein.
  
 
  0.737
SLK11813.1
Outer membrane receptor for ferrienterochelin and colicins.
  
 
  0.723
SLJ86665.1
TonB-dependent Receptor Plug Domain.
  
  
  0.705
SLJ86214.1
Vitamin B12 transporter.
  
  
  0.665
SLK02719.1
TonB-dependent Receptor Plug Domain.
  
 
  0.662
SLK00420.1
FecR family protein.
 
    0.646
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.