STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK00661.1Rieske [2Fe-2S] domain-containing protein. (361 aa)    
Predicted Functional Partners:
SLK00599.1
3-oxosteroid 1-dehydrogenase.
  
  
  0.872
SLK12680.1
FAD binding domain-containing protein.
  
  
  0.825
SLJ88868.1
FAD binding domain-containing protein.
  
  
  0.823
SLK00657.1
Hypothetical protein.
 
  
  0.789
SLK00666.1
Amidase/6-aminohexanoate-cyclic-dimer hydrolase; Belongs to the amidase family.
 
     0.779
SLK00579.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  
  0.772
SLK00812.1
SnoaL-like domain-containing protein.
  
  
  0.756
SLJ94994.1
3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9, 17-dione monooxygenase.
  
     0.753
SLK00872.1
3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9, 17-dione monooxygenase.
  
     0.751
SLK00880.1
3,4-dihydroxy-9,10-secoandrosta-1,3, 5(10)-triene-9,17-dione 4,5-dioxygenase.
  
     0.748
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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