STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK02822.1Membrane protein involved in the export of O-antigen and teichoic acid. (460 aa)    
Predicted Functional Partners:
SLK02818.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.930
SLK02825.1
Hypothetical protein.
 
     0.924
SLK02827.1
Endonuclease/Exonuclease/phosphatase family protein.
 
     0.789
SLJ88850.1
CDP-glycerol glycerophosphotransferase, TagB/SpsB family.
 
     0.770
SLK07414.1
MobA-like NTP transferase domain-containing protein.
 
     0.754
SLK09724.1
Hypothetical protein.
 
     0.747
SLJ93922.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    0.727
SLJ93925.1
Diadenosine tetraphosphate (Ap4A) hydrolase.
  
    0.721
SLJ93915.1
Hypothetical protein.
 
     0.707
SLJ93905.1
MobA-like NTP transferase domain-containing protein.
 
     0.706
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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