STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK03305.1Thermostable hemolysin. (181 aa)    
Predicted Functional Partners:
SLK03295.1
Long-chain acyl-CoA synthetase (AMP-forming).
 
   
 0.968
SLK03294.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.930
SLK03293.1
Tetratricopeptide repeat-containing protein.
 
     0.924
SLK03291.1
Methyltransferase domain-containing protein.
       0.614
SLK03282.1
FecR family protein.
       0.610
SLK03287.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.610
SLK03272.1
Outer membrane receptor proteins, mostly Fe transport.
       0.442
SLK03316.1
Isoquinoline 1-oxidoreductase, beta subunit.
 
     0.425
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.