STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK05962.1Uncharacterized iron-regulated membrane protein. (500 aa)    
Predicted Functional Partners:
SLK05971.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.937
SLK05966.1
Hypothetical protein.
       0.811
SLK05977.1
Iron complex outermembrane recepter protein.
 
    0.748
SLK02022.1
Xylose isomerase-like TIM barrel.
  
     0.696
SLK02024.1
Hypothetical protein.
  
     0.681
SLJ88956.1
Iron complex outermembrane recepter protein.
 
    0.656
SLK04116.1
Iron complex outermembrane recepter protein.
  
     0.592
SLK02822.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.577
SLJ97531.1
Iron complex outermembrane recepter protein.
  
     0.573
SLK06872.1
TonB-dependent receptor.
  
     0.572
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.