STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK05981.1Uncharacterized iron-regulated membrane protein. (409 aa)    
Predicted Functional Partners:
SLK05977.1
Iron complex outermembrane recepter protein.
 
  
 0.936
SLK05985.1
Iron complex outermembrane recepter protein.
 
     0.852
SLJ88956.1
Iron complex outermembrane recepter protein.
 
  
 0.759
SLJ93807.1
Uncharacterized iron-regulated membrane protein.
  
    0.680
SLK05971.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.677
SLK03341.1
FecR family protein.
 
     0.660
SLK05999.1
FecR family protein.
 
     0.647
SLK12392.1
FecR family protein.
 
     0.639
SLK03282.1
FecR family protein.
  
     0.635
SLK11971.1
FecR family protein.
 
     0.631
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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