STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK08381.1acyl-CoA dehydrogenase. (403 aa)    
Predicted Functional Partners:
SLK08383.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
 0.992
SLJ99555.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.972
SLJ87106.1
enoyl-CoA hydratase.
   
 0.960
SLJ87109.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.947
SLJ95229.1
acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
   
  0.933
SLJ89230.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
  0.932
SLJ95233.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.927
SLK06795.1
3-methylcrotonyl-CoA carboxylase beta subunit.
  
 
  0.919
SLJ96542.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.916
SLJ90782.1
fatty-acyl-CoA synthase.
  
 
  0.909
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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