STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK08786.1Conjugative transfer signal peptidase TraF. (185 aa)    
Predicted Functional Partners:
SLK08785.1
Helix-turn-helix domain-containing protein.
 
     0.903
SLK08787.1
Transglycosylase SLT domain-containing protein.
 
     0.817
SLJ91150.1
P-type conjugative transfer protein TrbJ.
 
     0.775
SLJ86023.1
P-type conjugative transfer protein TrbJ.
 
     0.775
SLJ86003.1
Type IV secretory pathway, VirD2 components (relaxase).
 
     0.774
SLJ91160.1
Type IV secretion system protein VirB2.
 
   
 0.774
SLJ91218.1
Type IV secretory pathway, VirD2 components (relaxase).
 
     0.774
SLK12250.1
Hypothetical protein.
 
     0.773
SLK12259.1
Type IV secretion system protein VirB2.
 
   
 0.773
SLJ91156.1
Type IV secretion system protein VirB3.
 
     0.772
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.