STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK08358.1Choline dehydrogenase. (540 aa)    
Predicted Functional Partners:
SLK07353.1
Protein of unknown function.
    
  0.796
SLJ86170.1
Hypothetical protein.
    
  0.654
SLJ97510.1
Ankyrin repeat.
    
  0.654
SLK12917.1
Choline dehydrogenase.
  
  
 
0.576
SLK13304.1
Choline dehydrogenase.
  
  
 
0.574
SLJ99178.1
Choline dehydrogenase.
  
  
 
0.563
SLK05713.1
Choline dehydrogenase.
  
  
 
0.554
SLJ97327.1
Alcohol dehydrogenase (cytochrome c)/quinohemoprotein ethanol dehydrogenase.
   
 0.542
SLK10158.1
Quinohemoprotein ethanol dehydrogenase.
   
 0.542
SLJ86192.1
Peptidase family M49.
    
  0.540
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.