STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLK12528.1IS66 C-terminal element. (55 aa)    
Predicted Functional Partners:
SLK13876.1
IS66 Orf2 like protein.
 
     0.768
SLK13882.1
Transposase.
  
     0.765
SLK12527.1
Transposase (or an inactivated derivative); Required for the transposition of the insertion element.
       0.631
SLK13520.1
Transposase.
  
     0.595
SLK11417.1
Transposase.
 
     0.590
SLK11412.1
Transposase.
 
     0.532
SLK07964.1
Transposase.
  
     0.411
Your Current Organism:
Novosphingobium mathurense
NCBI taxonomy Id: 428990
Other names: CCM 7473, MTCC 9020, N. mathurense, Novosphingobium mathurense Gupta et al. 2009, Novosphingobium sp. SM117, strain SM117
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