STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH39730.1Tetratricopeptide repeat-containing protein. (545 aa)    
Predicted Functional Partners:
SDH39703.1
Methyltransferase, FkbM family.
 0.896
SDH82878.1
Hypothetical protein.
    
 0.852
SDI37404.1
Rhamnosyltransferase.
  
 0.803
SDH82115.1
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family.
  
  0.782
SDI01705.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
   
  0.647
SDI01576.1
tRNA A-37 threonylcarbamoyl transferase component Bud32.
   
  0.647
SDH39676.1
Hypothetical protein.
 
 0.630
SDH39742.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.544
SDH31064.1
Coenzyme PQQ biosynthesis probable peptidase PqqF; Belongs to the peptidase M16 family.
   
    0.455
SDH93912.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.432
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.