STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH42224.1Carbon-nitrogen hydrolase. (372 aa)    
Predicted Functional Partners:
SDH42214.1
AraC-type DNA-binding protein.
       0.803
SDI39747.1
Glutamate synthase (NADPH) large subunit.
    
 0.770
SDI50698.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.742
SDI67863.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.725
SDI17343.1
4-hydroxyphenylpyruvate dioxygenase.
  
 0.719
SDI61908.1
Pyruvate carboxylase subunit B.
    
  0.681
SDH41117.1
Chorismate mutase /prephenate dehydratase.
 
 
 0.659
SDH42252.1
2,4-dienoyl-CoA reductase (NADPH2).
  
 0.648
SDH80979.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
    
 0.633
SDH81200.1
Anthranilate 1,2-dioxygenase reductase subunit.
    
 0.633
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.