STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH49447.1Phage major capsid protein E. (332 aa)    
Predicted Functional Partners:
SDH49374.1
Phage portal protein, lambda family.
 
     0.911
SDH49331.1
Phage terminase, large subunit GpA.
 
     0.907
SDH49398.1
ATP-dependent protease ClpP, protease subunit.
 
     0.865
SDH49314.1
Hypothetical protein.
 
     0.830
SDH49459.1
Hypothetical protein.
       0.801
SDH49488.1
Hypothetical protein.
       0.801
SDH49355.1
Hypothetical protein.
       0.624
SDH49414.1
Bacteriophage lambda head decoration protein D.
       0.623
SDH49509.1
Hypothetical protein.
       0.620
SDH32397.1
Hypothetical protein.
  
     0.616
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.