STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH50561.1Cytochrome b561. (182 aa)    
Predicted Functional Partners:
SDH50592.1
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
 
     0.901
SDH50521.1
Protein of unknown function.
       0.773
SDI27446.1
Cytochrome b561.
  
     0.693
SDH50654.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
 
     0.618
SDH50615.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.576
SDH85639.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
 
  
 0.520
SDH85650.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
 
  
 0.415
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.