STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH66383.1Type IV pilus assembly protein PilV. (162 aa)    
Predicted Functional Partners:
SDH66402.1
Type IV pilus assembly protein PilW.
 
  
 0.988
SDH66419.1
Type IV pilus assembly protein PilX.
 
  
 0.988
SDH66467.1
Type IV pilus assembly protein PilE.
 
  
 0.979
SDH66369.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.969
SDH66437.1
Type IV pilus assembly protein PilY1.
 
  
 0.938
SDI03262.1
Type IV pilus assembly protein PilY1.
 
  
 0.938
SDI03281.1
Type IV pilus assembly protein PilE.
 
  
 0.927
SDI03242.1
Type IV pilus assembly protein PilX.
 
  
 0.925
SDH37942.1
Type IV pilus assembly protein PilE.
 
  
 0.899
SDH66348.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.899
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.