Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDH68100.1 | SDH79205.1 | SAMN05216272_102496 | SAMN05216272_103128 | Hypothetical protein. | Serine/threonine protein phosphatase PrpC. | 0.994 |
SDH68100.1 | SDI01576.1 | SAMN05216272_102496 | SAMN05216272_1059 | Hypothetical protein. | tRNA A-37 threonylcarbamoyl transferase component Bud32. | 0.947 |
SDH68100.1 | SDI01705.1 | SAMN05216272_102496 | SAMN05216272_10516 | Hypothetical protein. | Lipopolysaccharide kinase (Kdo/WaaP) family protein. | 0.947 |
SDH68100.1 | SDI50845.1 | SAMN05216272_102496 | SAMN05216272_110162 | Hypothetical protein. | PAS domain S-box-containing protein. | 0.885 |
SDH68100.1 | SDI53074.1 | SAMN05216272_102496 | SAMN05216272_11165 | Hypothetical protein. | Nicotinamidase/pyrazinamidase. | 0.879 |
SDH68100.1 | SDI58285.1 | SAMN05216272_102496 | SAMN05216272_11244 | Hypothetical protein. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.894 |
SDH68100.1 | SDI72820.1 | SAMN05216272_102496 | SAMN05216272_11811 | Hypothetical protein. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.961 |
SDH68100.1 | arnA | SAMN05216272_102496 | SAMN05216272_11448 | Hypothetical protein. | UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | 0.904 |
SDH68100.1 | fmt | SAMN05216272_102496 | SAMN05216272_11245 | Hypothetical protein. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.890 |
SDH68100.1 | ndk | SAMN05216272_102496 | SAMN05216272_102179 | Hypothetical protein. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.944 |
SDH79205.1 | SDH68100.1 | SAMN05216272_103128 | SAMN05216272_102496 | Serine/threonine protein phosphatase PrpC. | Hypothetical protein. | 0.994 |
SDH79205.1 | SDI01576.1 | SAMN05216272_103128 | SAMN05216272_1059 | Serine/threonine protein phosphatase PrpC. | tRNA A-37 threonylcarbamoyl transferase component Bud32. | 0.947 |
SDH79205.1 | SDI01705.1 | SAMN05216272_103128 | SAMN05216272_10516 | Serine/threonine protein phosphatase PrpC. | Lipopolysaccharide kinase (Kdo/WaaP) family protein. | 0.947 |
SDH79205.1 | SDI50845.1 | SAMN05216272_103128 | SAMN05216272_110162 | Serine/threonine protein phosphatase PrpC. | PAS domain S-box-containing protein. | 0.899 |
SDH79205.1 | SDI53074.1 | SAMN05216272_103128 | SAMN05216272_11165 | Serine/threonine protein phosphatase PrpC. | Nicotinamidase/pyrazinamidase. | 0.879 |
SDH79205.1 | SDI58285.1 | SAMN05216272_103128 | SAMN05216272_11244 | Serine/threonine protein phosphatase PrpC. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.894 |
SDH79205.1 | SDI72820.1 | SAMN05216272_103128 | SAMN05216272_11811 | Serine/threonine protein phosphatase PrpC. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.961 |
SDH79205.1 | arnA | SAMN05216272_103128 | SAMN05216272_11448 | Serine/threonine protein phosphatase PrpC. | UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | 0.904 |
SDH79205.1 | fmt | SAMN05216272_103128 | SAMN05216272_11245 | Serine/threonine protein phosphatase PrpC. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.890 |
SDH79205.1 | ndk | SAMN05216272_103128 | SAMN05216272_102179 | Serine/threonine protein phosphatase PrpC. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.944 |
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