STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI20157.1Polar amino acid transport system substrate-binding protein. (268 aa)    
Predicted Functional Partners:
SDI20176.1
Polar amino acid transport system permease protein.
 0.988
SDI38611.1
Polar amino acid transport system permease protein.
 0.899
SDH68399.1
Polar amino acid transport system permease protein.
 
 0.894
SDH37588.1
Cystine transport system permease protein.
 0.879
SDI38581.1
Polar amino acid transport system permease protein.
 
 0.876
SDI38974.1
Polar amino acid transport system permease protein.
 0.873
SDH67498.1
Glutamate/aspartate transport system permease protein.
 
 0.871
SDH68382.1
Polar amino acid transport system permease protein.
 
 0.869
SDI37667.1
Polar amino acid transport system permease protein.
 
 0.861
SDH67483.1
Glutamate/aspartate transport system permease protein.
 
 0.854
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.