STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI26155.1Choline dehydrogenase. (527 aa)    
Predicted Functional Partners:
SDI26136.1
Cytochrome c, mono-and diheme variants.
 
 0.994
SDI26176.1
Membrane bound FAD containing D-sorbitol dehydrogenase.
 
 
   0.994
SDI05783.1
Cytochrome c, mono-and diheme variants.
 
 0.967
SDH62141.1
Hypothetical protein.
   
 0.881
SDH79246.1
Hypothetical protein.
   
 0.881
SDI25524.1
High-affinity iron transporter.
   
 
 0.848
SDH37144.1
Hypothetical protein.
    
 0.821
SDI17311.1
Hypothetical protein.
    
 0.821
SDI63995.1
Hypothetical protein.
    
 0.821
SDH84441.1
DNA-binding winged helix-turn-helix (wHTH) domain-containing protein.
   
 0.766
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.