STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI35262.1Protein of unknown function. (90 aa)    
Predicted Functional Partners:
SDI01769.1
N-acetylglucosaminyl deacetylase, LmbE family.
  
     0.768
SDI62041.1
Outer membrane porin, OprD family.
  
     0.740
SDH38944.1
Arc-like DNA binding domain-containing protein.
  
     0.735
SDH94904.1
Hypothetical protein.
  
     0.735
SDI35674.1
Outer membrane porin, OprD family.
  
     0.733
SDH83645.1
Outer membrane porin, OprD family.
  
     0.714
SDI17188.1
Porin-like protein GalP.
  
     0.712
SDH37250.1
Outer membrane porin, OprD family.
  
     0.709
SDH43249.1
Outer membrane porin, OprD family.
  
     0.709
SDH94490.1
Hypothetical protein.
  
     0.703
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.