STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI44864.1Protocatechuate 3,4-dioxygenase alpha subunit. (201 aa)    
Predicted Functional Partners:
SDI44844.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
0.999
SDI44883.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.966
SDH59696.1
P-hydroxybenzoate 3-monooxygenase.
 
  
 0.939
SDI44900.1
4-carboxymuconolactone decarboxylase.
 
 
 0.912
SDI17343.1
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.838
SDI44819.1
LysR family transcriptional regulator, pca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.833
SDH80979.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
 
 
 0.798
SDH81200.1
Anthranilate 1,2-dioxygenase reductase subunit.
 
 
 0.791
SDI25693.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.754
SDI67896.1
NAD(P)H-flavin reductase.
  
 
 0.754
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.