STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI54003.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
SDI53940.1
Uncharacterized phage protein gp47/JayE.
       0.566
SDI53959.1
Hypothetical protein.
       0.566
SDI53982.1
Hypothetical protein.
       0.566
SDI53912.1
Protein of unknown function.
       0.566
SDI53776.1
Protein of unknown function.
       0.555
SDI53803.1
Hypothetical protein.
       0.555
SDI53824.1
Putative chitinase.
       0.555
SDI53847.1
Protein of unknown function.
       0.555
SDI53869.1
Protein of unknown function.
       0.555
SDI53894.1
Hypothetical protein.
       0.555
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.