STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI53390.1N-acyl-D-aspartate/D-glutamate deacylase. (582 aa)    
Predicted Functional Partners:
SDI53374.1
Hypothetical protein.
 
     0.837
SDI53345.1
Bile acid:Na+ symporter, BASS family.
       0.791
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
    
  0.647
SDI53317.1
AraC-type DNA-binding protein.
 
    0.639
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
  0.628
SDH65105.1
Hypothetical protein.
  
     0.594
SDH82635.1
Hypothetical protein.
  
     0.524
SDH70649.1
Steroid delta-isomerase.
  
     0.471
SDH71253.1
3-ketosteroid 9alpha-monooxygenase subunit A.
 
     0.449
SDI75643.1
2,3-dihydroxybiphenyl 1,2-dioxygenase.
  
     0.438
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.