STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI59412.1Lipopolysaccharide transport system ATP-binding protein. (420 aa)    
Predicted Functional Partners:
SDI59402.1
Lipopolysaccharide transport system permease protein.
 
  
 0.980
SDH58402.1
ABC-2 type transport system permease protein.
  
 0.960
SDI59487.1
Rhamnosyl/mannosyltransferase.
 
     0.926
SDI37489.1
Lipopolysaccharide transport system permease protein.
 
  
 0.916
SDI59446.1
Alpha-1,2-rhamnosyltransferase.
 
     0.905
SDI59474.1
Alpha-1,3-rhamnosyl/mannosyltransferase.
 
     0.891
SDI59329.1
GDP-4-dehydro-6-deoxy-D-mannose reductase.
 
    0.861
gmd
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
   
 0.857
SDI59372.1
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
    0.835
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.832
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.