STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI64654.1AmpD protein. (188 aa)    
Predicted Functional Partners:
SDI64662.1
AmpE protein.
  
  
 0.850
nagZ
beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
  
 0.802
SDI02644.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.796
SDI24536.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.796
SDI36761.1
Muramoyltetrapeptide carboxypeptidase.
    
 0.740
mpl
UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
  
  
 0.720
SDI48334.1
Uncharacterized conserved protein YbbC, DUF1343 family.
    
 0.694
SDI15387.1
D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7); Belongs to the peptidase S11 family.
  
  
 0.646
SDI29758.1
Hypothetical protein.
  
  
 0.639
SDH40420.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
    
 0.635
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.