STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI68066.1Outer membrane protein OmpA. (580 aa)    
Predicted Functional Partners:
SDI68036.1
Type VI secretion system protein ImpK.
 
 
 0.948
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.930
SDI68086.1
Type VI secretion system secreted protein Hcp.
 
  
 0.927
SDI68018.1
Type VI secretion system protein ImpJ.
 
  
 0.914
SDI67994.1
Type VI secretion system protein ImpC.
 
  
 0.864
SDI67983.1
Type VI secretion system protein ImpB.
 
  
 0.835
SDI68123.1
Type VI secretion system secreted protein VgrG.
 
     0.833
SDI64075.1
Type VI secretion system protein ImpL.
 
 
 0.827
SDI19390.1
Protein of unknown function.
    
 
 0.810
SDI64194.1
Type VI secretion system protein.
  
    0.753
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.