STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI73071.1Uncharacterized conserved protein, DUF849 family. (295 aa)    
Predicted Functional Partners:
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.935
SDI73109.1
acyl-CoA thioester hydrolase.
 
 
 0.934
SDI73054.1
Glycine betaine/proline transport system substrate-binding protein.
 
  
 0.749
SDH32990.1
Kynurenine formamidase.
  
    0.672
SDH42547.1
Kynurenine formamidase.
  
    0.670
SDI73035.1
AraC family transcriptional regulator, carnitine catabolism transcriptional activator.
 
   
 0.638
SDI17734.1
3-oxoacid CoA-transferase subunit B.
    
  0.612
SDI73128.1
Acetyl esterase.
     
 0.580
SDI61690.1
Glutathione-independent formaldehyde dehydrogenase.
 
  
  0.576
SDI17713.1
3-oxoacid CoA-transferase subunit A.
    
 0.542
Your Current Organism:
Pseudomonas panipatensis
NCBI taxonomy Id: 428992
Other names: CCM 7469, MTCC 8990, P. panipatensis, Pseudomonas panipatensis Gupta et al. 2008, Pseudomonas sp. Esp-1, strain Esp-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.