Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKC40241.1 | SKC63251.1 | SAMN06296058_0079 | SAMN06296058_1721 | Dehydrogenase (flavoprotein). | Chorismate lyase / 3-hydroxybenzoate synthase. | 0.563 |
SKC41063.1 | SKC63251.1 | SAMN06296058_0137 | SAMN06296058_1721 | Aromatic amino acid aminotransferase apoenzyme. | Chorismate lyase / 3-hydroxybenzoate synthase. | 0.907 |
SKC41063.1 | SKC65141.1 | SAMN06296058_0137 | SAMN06296058_1853 | Aromatic amino acid aminotransferase apoenzyme. | Phenylalanine 4-hydroxylase. | 0.956 |
SKC41063.1 | SKC80955.1 | SAMN06296058_0137 | SAMN06296058_3416 | Aromatic amino acid aminotransferase apoenzyme. | Chorismate mutase. | 0.982 |
SKC54864.1 | SKC63251.1 | SAMN06296058_1082 | SAMN06296058_1721 | Hypothetical protein. | Chorismate lyase / 3-hydroxybenzoate synthase. | 0.557 |
SKC63251.1 | SKC40241.1 | SAMN06296058_1721 | SAMN06296058_0079 | Chorismate lyase / 3-hydroxybenzoate synthase. | Dehydrogenase (flavoprotein). | 0.563 |
SKC63251.1 | SKC41063.1 | SAMN06296058_1721 | SAMN06296058_0137 | Chorismate lyase / 3-hydroxybenzoate synthase. | Aromatic amino acid aminotransferase apoenzyme. | 0.907 |
SKC63251.1 | SKC54864.1 | SAMN06296058_1721 | SAMN06296058_1082 | Chorismate lyase / 3-hydroxybenzoate synthase. | Hypothetical protein. | 0.557 |
SKC63251.1 | SKC63274.1 | SAMN06296058_1721 | SAMN06296058_1722 | Chorismate lyase / 3-hydroxybenzoate synthase. | Hypothetical protein. | 0.711 |
SKC63251.1 | SKC65141.1 | SAMN06296058_1721 | SAMN06296058_1853 | Chorismate lyase / 3-hydroxybenzoate synthase. | Phenylalanine 4-hydroxylase. | 0.905 |
SKC63251.1 | SKC76892.1 | SAMN06296058_1721 | SAMN06296058_2714 | Chorismate lyase / 3-hydroxybenzoate synthase. | Elongation factor G. | 0.653 |
SKC63251.1 | SKC80955.1 | SAMN06296058_1721 | SAMN06296058_3416 | Chorismate lyase / 3-hydroxybenzoate synthase. | Chorismate mutase. | 0.910 |
SKC63251.1 | aroC | SAMN06296058_1721 | SAMN06296058_0383 | Chorismate lyase / 3-hydroxybenzoate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.905 |
SKC63251.1 | fusA | SAMN06296058_1721 | SAMN06296058_0911 | Chorismate lyase / 3-hydroxybenzoate synthase. | Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] | 0.543 |
SKC63251.1 | ubiA | SAMN06296058_1721 | SAMN06296058_1936 | Chorismate lyase / 3-hydroxybenzoate synthase. | 4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.905 |
SKC63274.1 | SKC63251.1 | SAMN06296058_1722 | SAMN06296058_1721 | Hypothetical protein. | Chorismate lyase / 3-hydroxybenzoate synthase. | 0.711 |
SKC65141.1 | SKC41063.1 | SAMN06296058_1853 | SAMN06296058_0137 | Phenylalanine 4-hydroxylase. | Aromatic amino acid aminotransferase apoenzyme. | 0.956 |
SKC65141.1 | SKC63251.1 | SAMN06296058_1853 | SAMN06296058_1721 | Phenylalanine 4-hydroxylase. | Chorismate lyase / 3-hydroxybenzoate synthase. | 0.905 |
SKC65141.1 | SKC80955.1 | SAMN06296058_1853 | SAMN06296058_3416 | Phenylalanine 4-hydroxylase. | Chorismate mutase. | 0.942 |
SKC76892.1 | SKC63251.1 | SAMN06296058_2714 | SAMN06296058_1721 | Elongation factor G. | Chorismate lyase / 3-hydroxybenzoate synthase. | 0.653 |
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