STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptCLipopolysaccharide export system protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. (186 aa)    
Predicted Functional Partners:
SKC76449.1
Lipopolysaccharide export system ATP-binding protein.
  
 0.999
SKC76455.1
Lipopolysaccharide export system protein LptA.
  
 
 0.995
SKC74544.1
Lipopolysaccharide export system permease protein.
 
 
 0.988
SKC74537.1
Lipopolysaccharide export system permease protein.
 
 
 0.983
SKC76478.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase); Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
  
  
 0.930
SKC76483.1
Arabinose-5-phosphate isomerase.
  
  
 0.863
SKC76441.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.723
SKC79284.1
Beta-lactamase superfamily domain-containing protein.
  
     0.695
SKC76504.1
Transcriptional regulator, BolA protein family; Belongs to the BolA/IbaG family.
       0.661
SKC62403.1
Cell division protein FtsN.
  
     0.641
Your Current Organism:
Pseudoxanthomonas indica
NCBI taxonomy Id: 428993
Other names: CCM 7430, MTCC 8596, P. indica, Pseudoxanthomonas indica Kumari et al. 2011, Pseudoxanthomonas sp. ES-4, Pseudoxanthomonas sp. P15, strain P15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.