Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Adeg_0232Catalase; PFAM: manganese containing catalase; KEGG: reu:Reut_B4409 catalase. (200 aa)    
Predicted Functional Partners:
Adeg_0233
Hypothetical protein.
 
  
 0.982
Adeg_0234
Hypothetical protein.
       0.757
Adeg_1401
TIGRFAM: stage IV sporulation protein A; PFAM: Sporulation stage IV protein A.
  
  
 0.495
Adeg_1247
TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
  
     0.452
Adeg_1248
TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: bgl:bglu_3p1130 major facilitator superfamily MFS_1.
  
    0.409
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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