STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Adeg_0352PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_01020 ABC-type transporter, permease protein (nitrate/sulfonate/bicarbonate transporter). (245 aa)    
Predicted Functional Partners:
Adeg_0353
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP0962 putative ABC transport proteins, ATP-binding component.
 
 
 0.996
Adeg_0354
PFAM: NMT1/THI5 like domain protein; NLPA lipoprotein; SMART: extracellular solute-binding protein family 3; KEGG: dat:HRM2_01000 ABC-type transporter, periplamsic substrate binding protein.
 
 
 0.996
Adeg_1104
PFAM: ABC transporter related; ABC nitrate/sulphonate/bicarbonate family transporter, ATPase subunit; SMART: AAA ATPase; KEGG: gme:Gmet_0523 ABC transporter-related protein.
 
 
 0.956
Adeg_0494
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: bbr:BB4362 hypothetical protein.
  
 
 0.913
Adeg_1451
TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: geo:Geob_0420 4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
      0.819
Adeg_0355
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_4016 radical SAM domain-containing protein.
       0.549
Adeg_1888
PFAM: nitrogen regulatory protein P-II; KEGG: sfu:Sfum_0573 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.542
Adeg_1258
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dol:Dole_3062 uroporphyrin-III C-methyltransferase.
     
 0.400
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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