STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_0502PFAM: DNA polymerase beta domain protein region; KEGG: gur:Gura_1133 DNA polymerase beta subunit. (124 aa)    
Predicted Functional Partners:
Adeg_0503
KEGG: gur:Gura_3172 hypothetical protein.
 
     0.939
Adeg_0504
PFAM: glycosyl transferase group 1; KEGG: ank:AnaeK_4413 glycosyl transferase group 1.
       0.768
Adeg_1788
PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll8382 multi-drug resistance efflux pump.
  
     0.629
Adeg_0501
PFAM: copper amine oxidase domain protein.
       0.517
Adeg_0746
PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: Kelch motif family protein.
  
    0.517
Adeg_1817
PFAM: transposase IS605 OrfB; KEGG: pha:PSHAa0341 transposase.
  
     0.490
Adeg_1404
PFAM: transposase IS605 OrfB; KEGG: pha:PSHAa0341 transposase.
  
     0.471
Adeg_0819
PFAM: transposase IS605 OrfB; KEGG: pha:PSHAa0341 transposase.
  
     0.464
Adeg_0132
PFAM: transposase IS605 OrfB; KEGG: pha:PSHAa0341 transposase.
  
     0.462
Adeg_0123
PFAM: transposase IS605 OrfB; KEGG: pha:PSHAa0341 transposase.
  
     0.461
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.